ClustalW
2.0.10
YOUR EMAIL
ALIGNMENT TITLE
RESULTS
ALIGNMENT
interactive
email
full
fast
KTUP
(WORD SIZE)
WINDOW
LENGTH
SCORE TYPE
TOPDIAG
PAIRGAP
def
1
2
3
4
5
def
10
9
8
7
6
5
4
3
2
1
0
percent
absolute
def
10
9
8
7
6
5
4
3
2
1
def
1
2
3
4
5
10
25
50
100
250
500
MATRIX
GAP OPEN
NO END GAPS
GAP EXTENSION
GAP DISTANCES
def
blosum
pam
gonnet
id
def
100
50
25
10
5
2
1
no
yes
def
0.05
0.5
1.0
2.5
5.0
7.5
10.0
def
10
9
8
7
6
5
4
3
2
1
ITERATION
NUMITER
none
tree
alignment
1
2
3
4
5
6
7
8
9
10
OUTPUT
PHYLOGENETIC TREE
OUTPUT FORMAT
OUTPUT ORDER
TREE TYPE
CORRECT DIST.
IGNORE GAPS
CLUSTERING
aln w/numbers
aln wo/numbers
gcg MSF
phylip
pir
gde
aligned
input
none
nj
phylip
dist
off
on
off
on
NJ
UPGMA
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ClustalW 2.0.10